Heinrich Model Simplified ODE:8
Original Heinrich model was a differential equation system for a two-compartment model with two SNARE pairs (X,U and Y,V) and one cargo (C) and transport vesicles with coats A or B
J.Cell Biol.10.1083/jcb.200409087 Heinrich et al.Supplement
The model was adapted to Mathematica by John S. McCaskill and simplified to only two snares X and Y and no cargo and then to constant compartment sizes s1 and s2 and hence also numbers of transport vesicles of types A and B, and then here to ignore differences in vesicle origin for fusion rates.Result is 8 coupled ODEs for amounts of snares X and Y amounts on compartments 1,2 (4) on vesicles of type A or B (4). In this file the fusion rates are left unnormalized.
ODEs with explicit time dept variables
Simulation run without normalized fusion
Simulation run with normalized fusion
auxiliary quantitites of interest
| Created by Mathematica (January 9, 2007) |  |